- Other College Appointments
- Cornell Tech
- Weill Cornell Medicine
Biography
Mert R. Sabuncu received the B.S. degree in Electrical and Electronics Engineering from Middle East Technical University, Ankara, Turkey, in 2001, and the Ph.D. degree in Electrical Engineering from Princeton University, Princeton, NJ, in 2006. He completed postdoctoral training at the Computer Science and Artificial Intelligence Laboratory (CSAIL) at the Massachusetts Institute of Technology. He is currently a Professor of Electrical and Computer Engineering at Cornell University and Cornell Tech, with a secondary appointment in the Department of Radiology at Weill Cornell Medicine.
His research lies at the intersection of artificial intelligence, signal processing, and biomedical imaging, with a particular emphasis on Artificial Intelligence for Medical Imaging. His work focuses on developing machine learning and statistical inference methods for analyzing high-dimensional imaging data, including medical image registration, segmentation, representation learning, and longitudinal modeling. A central theme of his research is combining modern deep learning with principled statistical modeling to enable robustness, interpretability, and generalization across populations, imaging modalities, and clinical settings. These methods are applied to large-scale neuroimaging studies and translational radiology problems, often in close collaboration with clinicians.
Sabuncu has authored or coauthored more than 200 peer-reviewed publications in leading journals and conferences spanning medical imaging, machine learning, and neuroscience. His work has been recognized with several honors, including an NSF CAREER Award and multiple MICCAI Young Scientist Awards. He is a Senior Member of IEEE.
Research Interests
- Biomedical image analysis, with application focus in neurology/neuroscience
- Applied machine learning in bio-medicine
- Probabilistic modeling of biological (e.g., genetic) data
- Image processing, computer vision.
- Biotechnology
- Artificial Intelligence
- Computer Aided Diagnosis
- Image Analysis
- Signal and Image Processing
- Statistics and Machine Learning
- Bioengineering
- Biomedical Engineering
- Biomedical Imaging and Instrumentation
- Computational Science and Engineering
- Neuroscience
- Systems and Synthetic Biology
- Systems and Networking
- Bio-Electrical Engineering
- Information Theory and Communications
- Information, Networks, and Decision Systems
Select Publications
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Sabuncu, M. R., Ge, T., Holmes, A. J., Smoller, J. W., & Fischl, B.
Morphometricity as a measure of the neuroanatomical signature of a trait.
Proceedings of the National Academy of Sciences, vol. 113, no. 39, pp. E5749–E5756, 2016. -
Dalca, A. V., Balakrishnan, G., Guttag, J., & Sabuncu, M. R. VoxelMorph: A learning framework for deformable medical image registration. IEEE Transactions on Medical Imaging, vol. 38, no. 8, pp. 1788–1800, 2019.
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Wang, A. Q., Karaman, B., Kim, H., Rosenthal, J., Saluja, R., Young, S. I., & Sabuncu, M. R.
A framework for interpretability in machine learning for medical imaging. IEEE Access, vol. 12, pp. 1–16, 2024. -
Kim, H., Karaman, B. K., Zhao, Q., Wang, A. Q., & Sabuncu, M. R. Learning-based inference of longitudinal image changes: Applications in embryo development, wound healing, and aging brain. Proceedings of the National Academy of Sciences, vol. 122, no. 8, e2411492122, 2025.
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Jamison, K. W., Gu, Z., Wang, Q., Tozlu, C., Sabuncu, M. R., & Kuceyeski, A. Krakencoder: A unified brain connectome translation and fusion tool. Nature Methods, 2025.
Select Awards and Honors
- Michael Tien '72 Sustained Excellence & Innovation in Engineering Education Award, College of Engineering, Cornell University 2021
- Young Investigator Publication Impact Award, Co-authored paper, Medical Image Computing and Computer Assisted Intervention (MICCAI) 2011
- Career Development Grant (K25), National Institute of Biomedical Imaging and Bioengineering (NIBIB), National Institute of Health (NIH) 2011
- Catalyst KL2 Merit Award, Harvard University 2010
- Outstanding Teaching Assistant Award, Department of Electrical Engineering, Princeton University 2006
Education
- B.S., Electrical and Electronic Engineering, Middle East Technical University 2001
- M.Eng., Electrical Engineering, Princeton University 2003
- Ph.D., Electrical Engineering, Princeton University 2006